miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|254007765|gb|GH998136.1|GH998136 GCACGAGGGTCACGCTAATTTGTTATTCATTCCTGTAAAACATGTGAAAAAATTGGAAATTTCCATTCAAAGCCAATTTT
GTTGCACTGTTTTGTTATTTGCAACAACCGCATTCAATTTTGAAGTCTAAAACATGTCTAATGGTGAAGCAGAGCCGAAT
GGAGACTGCGCGATGCAGACGGAGCAGGCCGCTGAAAAACGCGTTGGTTGTGCCCACTACAAGCGCCGAGCTAAGTTTGT
AACGCCATGCTGCAACAAGTTGTACATGTGCCGATACTGTCACGATGAAAACGAAGAGCACTACTTCAACCGCAAGTCGG
TCACCGAGCTCATCTGTACGGAGTGTGACACTCGGCAGAAAGTGCAGGCGGAGTGTGAGAACTGTGGTGTCCGGTTTGGA
AAGTACACATGTCTGATCTGCAACCTGTTCGACGACGAGGACAAGCGACAGTACCACTGCGATGGCTGTGGAATATGCCG
CGTGGGCGGTCGCGACCGCTTCTTCCATTGCGAGCGGTGCAATATGTGTCTGCCGGTGCAGTTACAACGCGTCGGCCACA
GGTGTGTGGAGAACGTGTCCCGCTCCAACTGCCCGGTGTGCTTAGAAGACATCCACACGTCCCGGATCCCGTGCCACATC
CCGGACTGCGGGCACTTGCTGCACCGGCCCTGCTTCGAGCAGCTGCTGCACTCGGGACACTATGCGTGCCCTACCTGCCA
GACTAGCATGATTGACATGTCCAACTTATGGAATTACCTGGACTCAGAAGTGGCAGCGACGCCTATGCCGCCGGAATATG
CGGACTACAAAGCAACGATATTGTGCAAAGACTGTCATAAGTTGTCCACTGTCAGTTCCACGTGGTAGGACTAAAGTGCC
AACATTGCGGGGCTTACAACACGTGCCAACCAATGGATTCCACAAGTAAGT




Most similar to sp|Q9CR50|ZN363_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger
           domain-containing protein 1 OS=Mus musculus GN=Rchy1
           PE=1 SV=1
          Length = 261

 Score =  274 bits (701), Expect(2) = 2e-76
 Identities = 119/216 (55%), Positives = 147/216 (68%)
 Frame = +2

Query: 206 GCAHYKRRAKFVTPCCNKLYMCRYCHDENEEHYFNRKSVTELICTECDTRQKVQAECENC 385
           GC HY R      PCC+KLY CR CHD NE+H  +R  V E+ C  C+  Q  Q  CE+C
Sbjct: 19  GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDC 78

Query: 386 GVRFGKYTCLICNLFDDEDKRQYHCDGCGICRVGGRDRFFHCERCNMCLPVQLQRVGHRC 565
              FG+Y C IC+LF D+DKRQYHC+ CGICR+G ++ FFHC +CN+CL   L R  H+C
Sbjct: 79  STLFGEYYCSICHLF-DKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNL-RGKHKC 136

Query: 566 VENVSRSNCPVCLEDIHTSRIPCHIPDCGHLLHRPCFEQLLHSGHYACPTCQTSMIDMSN 745
           +ENVSR NCP+CLEDIHTSR+  H+  CGHLLHR C+E++L  G Y CP C  S +DM+ 
Sbjct: 137 IENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTR 195

Query: 746 LWNYLDSEVAATPMPPEYADYKATILCKDCHKLSTV 853
            W  LD+EVA TPMP EY +    ILC DC+  STV
Sbjct: 196 YWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTV 231



 Score = 33.5 bits (75), Expect(2) = 2e-76
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 853 QFHVVGLKCQHCGAYNTCQ 909
           QFH++G+KC+ C +YNT Q
Sbjct: 232 QFHILGMKCKLCDSYNTAQ 250


>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger
           domain-containing protein 1 OS=Homo sapiens GN=RCHY1
           PE=1 SV=1
          Length = 261

 Score =  272 bits (695), Expect(2) = 1e-75
 Identities = 118/216 (54%), Positives = 146/216 (67%)
 Frame = +2

Query: 206 GCAHYKRRAKFVTPCCNKLYMCRYCHDENEEHYFNRKSVTELICTECDTRQKVQAECENC 385
           GC HY R      PCC+KLY CR CHD NE+H  +R  V E+ C  C+  Q  Q  CE C
Sbjct: 19  GCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEEC 78

Query: 386 GVRFGKYTCLICNLFDDEDKRQYHCDGCGICRVGGRDRFFHCERCNMCLPVQLQRVGHRC 565
              FG+Y C IC+LF D+DK+QYHC+ CGICR+G ++ FFHC +CN+CL + LQ   H+C
Sbjct: 79  STLFGEYYCDICHLF-DKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQG-RHKC 136

Query: 566 VENVSRSNCPVCLEDIHTSRIPCHIPDCGHLLHRPCFEQLLHSGHYACPTCQTSMIDMSN 745
           +ENVSR NCP+CLEDIHTSR+  H+  CGHLLHR C+E++L  G Y CP C  S +DM+ 
Sbjct: 137 IENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTR 195

Query: 746 LWNYLDSEVAATPMPPEYADYKATILCKDCHKLSTV 853
            W  LD EVA TPMP EY +    ILC DC+  STV
Sbjct: 196 YWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTV 231



 Score = 33.1 bits (74), Expect(2) = 1e-75
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 853 QFHVVGLKCQHCGAYNTCQ 909
           QFH++G+KC+ C +YNT Q
Sbjct: 232 QFHILGMKCKICESYNTAQ 250


>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16
           OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
           GN=SPAC2F3.16 PE=2 SV=1
          Length = 425

 Score =  179 bits (455), Expect = 2e-44
 Identities = 82/215 (38%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
 Frame = +2

Query: 203 VGCAHYKRRAKFVTPCCNKLYMCRYCHDENEEHYFNRKSVTELICTECDTRQKVQAECEN 382
           +GC+HY R  K     C++ Y CR+CH++  +H   R +V  ++C  C   Q     C+ 
Sbjct: 140 LGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKY 199

Query: 383 CGVRFGKYTCLICNLFDDE-DKRQYHCDGCGICRVGG--RDRFFHCERCNMCLPVQLQRV 553
           C    G+Y C  C L+DD+ +K  YHCD CGICR+G    D +FHC+ C +CLP+ +   
Sbjct: 200 CKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNT 259

Query: 554 GHRCVENVSRSNCPVCLEDIHTSRIPCHIPDCGHLLHRPCFEQLLHSGHYACPTCQTSMI 733
            HRC+E  +  NCP+C E +  SR       C H LH+ C E+ + + +Y CPTC  ++I
Sbjct: 260 -HRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRT-NYRCPTCYKTII 317

Query: 734 DMSNLWNYLDSEVAATPMPPEYADYKATILCKDCH 838
           ++++L+  LD E+   PMP  Y  + +TI C DC+
Sbjct: 318 NVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCN 352